Kenya has about 103 National Secondary Schools grouped into four different clusters. The clusters are grouped depending on the following factors: infrastructures, human resources and the students’ capability. Class eight candidate are supposed to choose one school from each cluster before they sit for Kenya Certificate for Primary Education (KCPE) Exams. The fees in the national secondary schools is now regulated by the Ministry of Education as per the 2026 circular, although there are some schools that charge parents/guardian in the high of 100, 000 shilling. The approximate fees for national schools is approximately Ksh.75, 798.
| SCHOOL NAME | CODE | TYPE | APPROXIMATE FEE PER YEAR | COUNTY | |
| Baricho Boys | 9200012 | Boys boarding | 75798 | Kirinyaga | |
| Baringo High | 33500018 | Boys boarding | 75798 | Baringo | |
| Bishop Gatimu Ngandu | 8200010 | Girls boarding | 75798 | Nyeri | |
| Butere Girls | 37600005 | Girls boarding | 75798 | Kakamega | |
| Butula Boys High School | 35600007 | Boys boarding | 75798 | Bungoma | |
| Chavakali Secondary | 38600006 | Boys boarding | 75798 | Vihiga | |
| Ikuu Boys | 19300010 | Boys boarding | 75798 | Tharaka Nithi | |
| Isiolo Girls | 17300009 | Girls boarding | 75798 | Isiolo | |
| Kabare Girls Secondary | 9200011 | Girls boarding | 75798 | Kirinyaga | |
| Kaplong Girls | 25500019 | Girls boarding | 75798 | Bomet | |
| Kilgoris Boys | 32500016 | Boys boarding | 75798 | Narok | |
| Kisumu Girls | 39700009 | Girls boarding | 75798 | Kisumu | |
| Kitui High | 13300007 | Boys boarding | 75798 | Kitui | |
| Kwale High | 2100005 | Boys boarding | 75798 | Kwale | |
| Lodwar High | 21500012 | Boys boarding | 75798 | Lodwar | |
| Maralal High | 22500013 | Boys boarding | 75798 | Samburu | |
| Matuga Girls | 2100006 | Girls boarding | 75798 | Kwale | |
| Mbita High | 41700010 | Boys boarding | 75798 | Homa Bay | |
| Moi Kapsowar | 34500017 | Girls boarding | 75798 | Uasin Gishu | |
| Mugoiri Girls High | 10200013 | Girls boarding | 75798 | Muranga | |
| NEP Girls | 45801102 | Girls boarding | 75798 | Garissa | |
| Njonjo | 30500020 | Girls boarding | 75798 | Laikipia | |
| Ole Tipis Girls | 32500015 | Girls boarding | 75798 | Narok | |
| Shimo La Tewa | 3100007 | Boys boarding | 75798 | Kilifi | |
| Siakago Girls | 14300011 | Girls boarding | 75798 | Embu | |
| St. Joseph Boys | 23500014 | Boys boarding | 75798 | Trans Nzoia | |
| St. Marys Girls | 15300012 | Girls boarding | 75798 | Meru | |
